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The dynamics of GII.4 Norovirus in Ho Chi Minh City, Vietnam

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dc.contributor.authorMy, Phan Vu Tra
dc.contributor.authorLam, Ha Minh
dc.contributor.authorThompson, Corinne
dc.contributor.authorPhuc, Hoang Le
dc.contributor.authorTuyet, Pham Thi Ngoc
dc.contributor.authorVinh, Ha
dc.contributor.authorHoang, Nguyen Van Minh
dc.contributor.authorMinh, PhamVan
dc.contributor.authorVinh, Nguyen Thanh
dc.contributor.authorThuy, Cao Thu
dc.contributor.authorClements, Archie
dc.date.accessioned2015-12-13T22:28:44Z
dc.date.issued2013
dc.date.updated2016-02-24T10:05:12Z
dc.description.abstractNorovirus (NoV) is a major cause of epidemic gastroenteritis in industrialized countries, yet the epidemiological significance of NoV in industrializing countries remains poorly understood. The spatiotemporal distribution of NoV genotypes identified in 2054 enrolled children was investigated between May 2009 and December 2010, in Ho Chi Minh City (HCMC), Vietnam. A total of 315 NoV extracted from stool samples were genotyped and GPS mapped to their source. Genogroup II NoV, particularly GII.4, were predominant, and the GII.4 strains could be subgrouped into GII.4-2006b (Minerva) and GII.4-2010 (New Orleans) variants. There was no spatiotemporal structure among the endemic GII strains; yet a significant spatiotemporal signal corresponding with the novel introduction of GII.4-2010 variant was detected. These data show that NoV GII.4 variants are highly endemic in HCMC and describe a scenario of rapid NoV strain replacement occurring in HCMC in early 2010.
dc.identifier.issn1567-1348
dc.identifier.urihttp://hdl.handle.net/1885/74334
dc.publisherElsevier BV
dc.sourceInfection, Genetics and Evolution
dc.subjectKeywords: acute diarrhea; article; asymptomatic disease; child; controlled study; feces analysis; genotype; human; infant; major clinical study; microbial population dynamics; nonhuman; Norovirus; norovirus infection; nucleotide sequence; preschool child; priority Cluster; GII.4; Norovirus; Phylogenetic; Spatial; Temporal
dc.titleThe dynamics of GII.4 Norovirus in Ho Chi Minh City, Vietnam
dc.typeJournal article
local.bibliographicCitation.lastpage343
local.bibliographicCitation.startpage335
local.contributor.affiliationMy, Phan Vu Tra, Oxford University Clinical Research Unit
local.contributor.affiliationLam, Ha Minh, Oxford University Clinical Research Unit
local.contributor.affiliationThompson, Corinne, Oxford University Clinical Research Unit
local.contributor.affiliationPhuc, Hoang Le, Childrens Hospital
local.contributor.affiliationTuyet, Pham Thi Ngoc, Childrens Hospital 2
local.contributor.affiliationVinh, Ha, Hospital for Tropical Diseases
local.contributor.affiliationHoang, Nguyen Van Minh, Oxford University Clinical Research Unit
local.contributor.affiliationMinh, PhamVan, Oxford University Clinical Research Unit
local.contributor.affiliationVinh, Nguyen Thanh, Oxford University Clinical Research Unit
local.contributor.affiliationThuy, Cao Thu, Oxford University Clinical Research Unit
local.contributor.affiliationClements, Archie, College of Medicine, Biology and Environment, ANU
local.contributor.authoruidClements, Archie, u5611518
local.description.embargo2037-12-31
local.description.notesImported from ARIES
local.identifier.absfor060400 - GENETICS
local.identifier.ariespublicationU3488905xPUB4068
local.identifier.citationvolume18
local.identifier.doi10.1016/j.meegid.2013.04.014
local.identifier.scopusID2-s2.0-84880305870
local.type.statusPublished Version

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