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A minimum reporting standard for multiple sequence alignments

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dc.contributor.authorWong, Thomas
dc.contributor.authorKalyaanamoorthy, Subha
dc.contributor.authorMeusemann, Karen
dc.contributor.authorYeates, David K.
dc.contributor.authorMisof, Bernhard
dc.contributor.authorJermiin, Lars
dc.date.accessioned2021-02-21T22:23:06Z
dc.date.available2021-02-21T22:23:06Z
dc.date.issued2020
dc.date.updated2022-07-10T08:17:35Z
dc.description.abstractMultiple sequence alignments (MSAs) play a pivotal role in studies of molecular sequence data, but nobody has developed a minimum reporting standard (MRS) to quantify the completeness of MSAs. We present an MRS that relies on four simple completeness metrics. The metrics are implemented in AliStat, a program developed to support the MRS. A survey of published MSAs illustrates the benefits and unprecedented transparency offered by the MRS.
dc.description.sponsorshipCSIRO.en_AU
dc.format.mimetypeapplication/pdfen_AU
dc.identifier.issn2631-9268en_AU
dc.identifier.urihttp://hdl.handle.net/1885/223633
dc.language.isoen_AUen_AU
dc.provenanceThis is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.comen_AU
dc.publisherOxford University Press
dc.rights© The Author(s) 2020. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics
dc.rights.licenseCreative Commons Attribution Non-Commercial Licenseen_AU
dc.rights.urihttp://creativecommons.org/licenses/by-nc/4.0/en_AU
dc.sourceNAR Genomics and Bioinformatics
dc.titleA minimum reporting standard for multiple sequence alignments
dc.typeJournal article
dcterms.accessRightsOpen Accessen_AU
local.bibliographicCitation.issue2en_AU
local.bibliographicCitation.lastpage5en_AU
local.bibliographicCitation.startpage1en_AU
local.contributor.affiliationWong, Thomas, College of Science, ANUen_AU
local.contributor.affiliationKalyaanamoorthy, Subha, CSIROen_AU
local.contributor.affiliationMeusemann, Karen, Zoologisches Forschungsmuseum Alexander Koenig (ZFMK)en_AU
local.contributor.affiliationYeates, David K., CSIROen_AU
local.contributor.affiliationMisof, Bernhard, Zoologisches Forschungsmuseum Alexander Koenig (ZFMK)en_AU
local.contributor.affiliationJermiin, Lars, College of Science, ANUen_AU
local.contributor.authoruidWong, Thomas, t1645en_AU
local.contributor.authoruidJermiin, Lars, u5268558en_AU
local.description.notesImported from ARIESen_AU
local.identifier.absfor060102 - Bioinformaticsen_AU
local.identifier.absfor060309 - Phylogeny and Comparative Analysisen_AU
local.identifier.absseo890399 - Information Services not elsewhere classifieden_AU
local.identifier.absseo890201 - Application Software Packages (excl. Computer Games)en_AU
local.identifier.ariespublicationu9511635xPUB2051en_AU
local.identifier.citationvolume2en_AU
local.identifier.doi10.1093/nargab/lqaa024en_AU
local.identifier.thomsonIDWOS:000645610700025
local.publisher.urlhttps://academic.oup.com/nargaben_AU
local.type.statusPublished Versionen_AU

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