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The performance of the date-randomization test in phylogenetic analyses of time-structured virus data

Date

Authors

Duchene, Sebastian

Duchene, David

Holmes, Edward C.

Ho, Simon

Publisher

Society for Molecular Biology Evolution

Abstract

Rates and timescales of viral evolution can be estimated using phylogenetic analyses of time-structured molecular sequences. This involves the use of molecular-clock methods, calibrated by the sampling times of the viral sequences. However, the spread of

Keywords

Keywords: coat protein; analytical error; Article; Bayesian learning; calibration; cereal; cereal yellow dwarf virus; clinical evaluation; data analysis; date randomization test; evolutionary rate; molecular clock; nonhuman; nucleotide sequence; phylogenetic tree; Bayesian phylogenetics; date-randomization test; molecular clock; time-structured sequence data; tip calibrations; virus evolution

URI

http://hdl.handle.net/1885/71643

Collections

ANU Research Publications

Source

Molecular Biology and Evolution

Type

Journal article

DOI

10.1093/molbev/msv056

Restricted until

2037-12-31

Downloads

File

Description

01_Duchene_The_performance_of_the_2015.pdf (501.59 KB)

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