SeqVis: visualization of compositional heterogeneity in large alignments of nucleotides
dc.contributor.author | Ho, Joshua | |
dc.contributor.author | Adams, Cameron L | |
dc.contributor.author | Lew, Jie | |
dc.contributor.author | Matthews, Timothy | |
dc.contributor.author | Ng, Chiu | |
dc.contributor.author | Shahabi-Sirjani, Arash | |
dc.contributor.author | Tan, Leng | |
dc.contributor.author | Zhao, Yu | |
dc.contributor.author | Easteal, Simon | |
dc.contributor.author | Wilson, Susan | |
dc.contributor.author | Jermiin, Lars Sommer | |
dc.date.accessioned | 2015-12-13T22:36:26Z | |
dc.date.issued | 2006 | |
dc.date.updated | 2015-12-11T09:31:50Z | |
dc.description.abstract | Summary: Most phylogenetic methods assume that the sequences evolved under homogeneous, stationary and reversible conditions. Compositional heterogeneity in data intended for studies of phylogeny suggests that the data did not evolve under these conditions. SeqVis, a Java application for analysis of nucleotide content, reads sequence alignments in several formats and plots the nucleotide content in a tetrahedron. Once plotted, outliers can be identified, thus allowing for decisions on the applicability of the data for phylogenetic analysis. | |
dc.identifier.issn | 1367-4803 | |
dc.identifier.uri | http://hdl.handle.net/1885/76761 | |
dc.publisher | Oxford University Press | |
dc.source | Bioinformatics | |
dc.subject | Keywords: nucleotide derivative; article; cluster analysis; computer analysis; computer program; genetic heterogeneity; information processing; nonhuman; nucleotide sequence; phylogeny; priority journal; sequence alignment | |
dc.title | SeqVis: visualization of compositional heterogeneity in large alignments of nucleotides | |
dc.type | Journal article | |
local.bibliographicCitation.issue | 17 | |
local.bibliographicCitation.lastpage | 3 | |
local.bibliographicCitation.startpage | 2162 | |
local.contributor.affiliation | Ho, Joshua, University of Sydney | |
local.contributor.affiliation | Adams, Cameron L, University of Sydney | |
local.contributor.affiliation | Lew, Jie, University of Sydney | |
local.contributor.affiliation | Matthews, Timothy, University of Sydney | |
local.contributor.affiliation | Ng, Chiu, University of Sydney | |
local.contributor.affiliation | Shahabi-Sirjani, Arash, University of Sydney | |
local.contributor.affiliation | Tan, Leng, University of Sydney | |
local.contributor.affiliation | Zhao, Yu, University of Sydney | |
local.contributor.affiliation | Easteal, Simon, College of Medicine, Biology and Environment, ANU | |
local.contributor.affiliation | Wilson, Susan, College of Physical and Mathematical Sciences, ANU | |
local.contributor.affiliation | Jermiin, Lars Sommer, University of Sydney | |
local.contributor.authoremail | u8200596@anu.edu.au | |
local.contributor.authoruid | Easteal, Simon, u8200596 | |
local.contributor.authoruid | Wilson, Susan, u7401449 | |
local.description.embargo | 2037-12-31 | |
local.description.notes | Imported from ARIES | |
local.description.refereed | Yes | |
local.identifier.absfor | 080309 - Software Engineering | |
local.identifier.ariespublication | MigratedxPub5563 | |
local.identifier.citationvolume | 22 | |
local.identifier.doi | 10.1093/bioinformatics/btl283 | |
local.identifier.scopusID | 2-s2.0-33748650992 | |
local.identifier.uidSubmittedBy | Migrated | |
local.type.status | Published Version |
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