GeneBins: a database for classifying gene expression data, with application to plant genome arrays
| dc.contributor.author | Goffard, Nicolas | |
| dc.contributor.author | Weiller, Georg | |
| dc.date.accessioned | 2009-04-22T05:32:25Z | en_US |
| dc.date.accessioned | 2010-12-20T06:05:44Z | |
| dc.date.available | 2009-04-22T05:32:25Z | en_US |
| dc.date.available | 2010-12-20T06:05:44Z | |
| dc.date.issued | 2007-03-12 | en_US |
| dc.date.updated | 2015-12-09T08:26:43Z | |
| dc.description.abstract | BACKGROUND: To interpret microarray experiments, several ontological analysis tools have been developed. However, current tools are limited to specific organisms. RESULTS: We developed a bioinformatics system to assign the probe set sequences of any organism to a hierarchical functional classification modelled on KEGG ontology. The GeneBins database currently supports the functional classification of expression data from four Affymetrix arrays; Arabidopsis thaliana, Oryza sativa, Glycine max and Medicago truncatula. An online analysis tool to identify relevant functions is also provided. CONCLUSION: GeneBins provides resources to interpret gene expression results from microarray experiments. It is available at http://bioinfoserver.rsbs.anu.edu.au/utils/GeneBins/ webcite | |
| dc.format | 5 pages | |
| dc.identifier.citation | BMC Bioinformatics 8.87 (2007) | |
| dc.identifier.issn | 1471-2105 | en_US |
| dc.identifier.uri | http://hdl.handle.net/10440/115 | en_US |
| dc.identifier.uri | http://digitalcollections.anu.edu.au/handle/10440/115 | |
| dc.publisher | BioMed Central | |
| dc.rights | This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited | |
| dc.source | BMC Bioinformatics | |
| dc.source.uri | http://www.biomedcentral.com/content/pdf/1471-2105-8-87.pdf | en_US |
| dc.source.uri | http://www.biomedcentral.com/1471-2105/8/87 | en_US |
| dc.subject | Keywords: Arabidopsis thaliana; Expression data; Functional classification; Gene Expression Data; Medicago truncatula; Microarray experiments; On-line analysis; Ontological analysis; Amino acids; Bioinformatics; Computer aided diagnosis; Experiments; Gene expressio | |
| dc.title | GeneBins: a database for classifying gene expression data, with application to plant genome arrays | |
| dc.type | Journal article | |
| dcterms.dateAccepted | 2007-03-12 | en_US |
| local.bibliographicCitation.issue | 87 | |
| local.bibliographicCitation.lastpage | 5 | |
| local.bibliographicCitation.startpage | 1 | |
| local.contributor.affiliation | Goffard, Nicolas, Research School of Biological Sciences, Genomic Integrations Group | en_US |
| local.contributor.affiliation | Weiller, Georg, Research School of Biological Sciences, Genomic Integrations Group | en_US |
| local.contributor.authoruid | u4272504 | en_US |
| local.contributor.authoruid | u9009731 | en_US |
| local.identifier.absfor | 060405 | en_US |
| local.identifier.ariespublication | u4105084xPUB216 | en_US |
| local.identifier.citationvolume | 8 | |
| local.identifier.doi | 10.1186/1471-2105-8-87 | |
| local.identifier.scopusID | 2-s2.0-33947412321 | |
| local.identifier.uidSubmittedBy | u8103816 | en_US |
| local.type.status | Published Version | en_US |
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