Genome-wide discovery and characterization of maize long non-coding RNAs
Li, Lin; Eichten, Steven R; Shimizu, Rena; Petsch, Katherine; Yeh, Cheng-Ting; Wu, Wei; Chettoor, Antony M; Givan, Scott A; Cole, Rex A; Fowler, John E; Evans, Matthew M S; Scanlon, Michael J; Yu, Jianming; Schnable, Patrick S; Timmermans, Marja C P; Springer, Nathan M; Muehlbauer, Gary J
BACKGROUND Long non-coding RNAs (lncRNAs) are transcripts that are 200 bp or longer, do not encode proteins, and potentially play important roles in eukaryotic gene regulation. However, the number, characteristics and expression inheritance pattern of lncRNAs in maize are still largely unknown. RESULTS By exploiting available public EST databases, maize whole genome sequence annotation and RNA-seq datasets from 30 different experiments, we identified 20,163 putative lncRNAs. Of these lncRNAs,...[Show more]
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