Seneca, Francois OForet, SylvainBall, EldonSmith-Keune, CarolynMiller, David J.van Oppen, Madeleine2015-12-071436-2228http://hdl.handle.net/1885/26298Coral bleaching is a major threat to coral reefs worldwide and is predicted to intensify with increasing global temperature. This study represents the first investigation of gene expression in an Indo-Pacific coral species undergoing natural bleaching which involved the loss of algal symbionts. Quantitative real-time polymerase chain reaction experiments were conducted to select and evaluate coral internal control genes (ICGs), and to investigate selected coral genes of interest (GOIs) for changes in gene expression in nine colonies of the scleractinian coral Acropora millepora undergoing bleaching at Magnetic Island, Great Barrier Reef, Australia. Among the six ICGs tested, glyceraldehyde 3-phosphate dehydrogenase and the ribosomal protein genes S7 and L9 exhibited the most constant expression levels between samples from healthy-looking colonies and samples from the same colonies when severely bleached a year later. These ICGs were therefore utilised for normalisation of expression data for seven selected GOIs. Of the seven GOIs, homologues of catalase, C-type lectin and chromoprotein genes were significantly up-regulated as a result of bleaching by factors of 1.81, 1.46 and 1.61 (linear mixed models analysis of variance, P < 0.05), respectively. We present these genes as potential coral bleaching response genes. In contrast, three genes, including one putative ICG, showed highly variable levels of expression between coral colonies. Potential variation in microhabitat, gene function unrelated to the stress response and individualised stress responses may influence such differences between colonies and need to be better understood when designing and interpreting future studies of gene expression in natural coral populations.Keywords: Coral bleaching; Inter-colony variability; Internal controls; Molecular stress; Quantitative PCR; Bleaching; Cleaning; Finance; Polymerase chain reaction; Reefs; Regression analysis; Gene expression; proteome; bioassay; coral; coral bleaching; coral reef; Coral bleaching; Gene expression; Inter-colony variability; Internal control gene; Molecular stress response; Quantitative PCR200910.1007/s10126-009-9247-52016-02-24