IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

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dc.contributor.authorBui, Minh
dc.contributor.authorSchmidt, Heiko A.
dc.contributor.authorChernomor, Olga
dc.contributor.authorSchrempf, Dominik
dc.contributor.authorWoodhams, Michael D.
dc.contributor.authorvon Haeseler, Arndt
dc.contributor.authorLanfear, Robert
dc.date.accessioned2020-10-06T02:37:11Z
dc.date.available2020-10-06T02:37:11Z
dc.date.issued2020
dc.date.updated2020-06-28T08:19:18Z
dc.description.abstractIQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. Since the release of version 1 in 2014, we have continuously expanded IQ-TREE to integrate a plethora of new models of sequence evolution and efficient computational approaches of phylogenetic inference to deal with genomic data. Here, we describe notable features of IQ-TREE version 2 and highlight the key advantages over other software.en_AU
dc.description.sponsorshipThis work was supported by the Austrian Science Fund (Grant No. I-2805-B29) to A.v.H. and by the Australian National University Futures Scheme grant to R.L.en_AU
dc.format.mimetypeapplication/pdfen_AU
dc.identifier.issn0737-4038en_AU
dc.identifier.urihttp://hdl.handle.net/1885/212335
dc.language.isoen_AUen_AU
dc.provenance© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/ licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.en_AU
dc.publisherSociety for Molecular Biology Evolutionen_AU
dc.rights© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.en_AU
dc.rights.licenseCreative Commons Attribution Licenseen_AU
dc.rights.urihttp://creativecommons.org/ licenses/by/4.0/en_AU
dc.sourceMolecular Biology and Evolutionen_AU
dc.titleIQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Eraen_AU
dc.typeJournal articleen_AU
dcterms.accessRightsOpen Accessen_AU
local.bibliographicCitation.issue5en_AU
local.bibliographicCitation.lastpage1534en_AU
local.bibliographicCitation.startpage1530en_AU
local.contributor.affiliationBui, Minh, College of Engineering and Computer Science, ANUen_AU
local.contributor.affiliationSchmidt, Heiko A., University of Viennaen_AU
local.contributor.affiliationChernomor, Olga, University of Viennaen_AU
local.contributor.affiliationSchrempf, Dominik, Eotvos Lorand Universityen_AU
local.contributor.affiliationWoodhams, Michael D., University of Tasmaniaen_AU
local.contributor.affiliationvon Haeseler, Arndt, University of Viennaen_AU
local.contributor.affiliationLanfear, Robert, College of Science, ANUen_AU
local.contributor.authoruidBui, Minh, u1057847en_AU
local.contributor.authoruidLanfear, Robert, u4595144en_AU
local.description.notesImported from ARIESen_AU
local.identifier.absfor060409 - Molecular Evolutionen_AU
local.identifier.absfor010402 - Biostatisticsen_AU
local.identifier.absfor060102 - Bioinformaticsen_AU
local.identifier.absseo970106 - Expanding Knowledge in the Biological Sciencesen_AU
local.identifier.absseo970108 - Expanding Knowledge in the Information and Computing Sciencesen_AU
local.identifier.ariespublicationu9511635xPUB2039en_AU
local.identifier.citationvolume37en_AU
local.identifier.doi10.1093/molbev/msaa015en_AU
local.publisher.urlhttps://academic.oup.com/en_AU
local.type.statusPublished Versionen_AU

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