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Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

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Date

2006

Authors

DeSantis, T. Z.
Hugenholtz, P.
Larsen, N
Rojas, M.
Brodie, E. L.
Keller, K.
Dalevi, D.
Hu, P.
Andersen, G. L.
Huber, Thomas

Journal Title

Journal ISSN

Volume Title

Publisher

American Society for Microbiology

Abstract

A 16S rRNA gene database (http://greengenes.lbl.gov) addresses limitations of public repositories by providing chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies. It was found that there is incongruent

Description

Keywords

Keywords: Bacteria; Data acquisition; Database systems; Environmental impact; Genetic engineering; RNA; Chimera screening; Greengenes; Phylum-level lineages; Taxonomic nomenclature; Genes; ribosome RNA; bacterium; chimera; database; RNA; taxonomy; Archaebacterium;

Citation

URI

http://hdl.handle.net/1885/61504

Collections

ANU Research Publications

Source

Applied and Environmental Microbiology

Type

Journal article

Book Title

Entity type

Access Statement

License Rights

DOI

10.1128/AEM.03006-05

Restricted until

2037-12-31

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Description
01_DeSantis_Greengenes,_a_Chimera-Checked_2006.pdf (141.52 KB)

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