Sausage: protein threading with flexible force fields
Russell, Anthony; Ayers, Daniel; Torda, Andrew; Huber, Thomas
Sausage is a protein sequence threading program, but with remarkable run-time flexibility. Using different scripts, it can calculate protein sequence-structure alignments, search structure libraries, swap force fields, create models from alignments, convert file formats and analyse results. There are several different force fields which might be classed as knowledge-based although they do not rely on Boltzmann statistics. Different force fields are used for alignment calculations and subsequent...[Show more]
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