Skip navigation
Skip navigation

SeqVis: visualization of compositional heterogeneity in large alignments of nucleotides

Ho, Joshua; Adams, Cameron L; Lew, Jie; Matthews, Timothy; Ng, Chiu; Shahabi-Sirjani, Arash; Tan, Leng; Zhao, Yu; Easteal, Simon; Wilson, Susan; Jermiin, Lars Sommer

Description

Summary: Most phylogenetic methods assume that the sequences evolved under homogeneous, stationary and reversible conditions. Compositional heterogeneity in data intended for studies of phylogeny suggests that the data did not evolve under these conditions. SeqVis, a Java application for analysis of nucleotide content, reads sequence alignments in several formats and plots the nucleotide content in a tetrahedron. Once plotted, outliers can be identified, thus allowing for decisions on the...[Show more]

CollectionsANU Research Publications
Date published: 2006
Type: Journal article
URI: http://hdl.handle.net/1885/76761
Source: Bioinformatics
DOI: 10.1093/bioinformatics/btl283

Download

File Description SizeFormat Image
01_Ho_SeqVis:_visualization_of_2006.pdf94.5 kBAdobe PDF    Request a copy


Items in Open Research are protected by copyright, with all rights reserved, unless otherwise indicated.

Updated:  23 August 2018/ Responsible Officer:  University Librarian/ Page Contact:  Library Systems & Web Coordinator