RNA-LIM: a novel procedure for analyzing protein/single-stranded RNA propensity data with concomitant estimation of interface structure
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Hall, Damien; Li, Songling; Yamashita, Kazuo; Azuma, Ryuzo; Carver, John; Standley, Daron M.
Description
RNA-LIM is a procedure that can analyze various pseudo-potentials describing the affinity between single-stranded RNA (ssRNA) ribonucleotides and surface amino acids to produce a coarse-grained estimate of the structure of the ssRNA at the protein interface. The search algorithm works by evolving an ssRNA chain, of known sequence, as a series of walks between fixed sites on a protein surface. Optimal routes are found by application of a set of minimal "limiting" restraints derived jointly from...[Show more]
Collections | ANU Research Publications |
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Date published: | 2015 |
Type: | Journal article |
URI: | http://hdl.handle.net/1885/64044 |
Source: | Analytical Biochemistry |
DOI: | 10.1016/j.ab.2014.11.004 |
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01_Hall_RNA-LIM:_a_novel_procedure_for_2015.pdf | 3.91 MB | Adobe PDF | Request a copy |
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