Skip navigation
Skip navigation

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

DeSantis, T. Z.; Hugenholtz, P.; Larsen, N; Rojas, M.; Brodie, E. L.; Keller, K.; Dalevi, D.; Hu, P.; Andersen, G. L.; Huber, Thomas

Description

A 16S rRNA gene database (http://greengenes.lbl.gov) addresses limitations of public repositories by providing chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies. It was found that there is incongruent

dc.contributor.authorDeSantis, T. Z.
dc.contributor.authorHugenholtz, P.
dc.contributor.authorLarsen, N
dc.contributor.authorRojas, M.
dc.contributor.authorBrodie, E. L.
dc.contributor.authorKeller, K.
dc.contributor.authorDalevi, D.
dc.contributor.authorHu, P.
dc.contributor.authorAndersen, G. L.
dc.contributor.authorHuber, Thomas
dc.date.accessioned2015-12-10T23:00:49Z
dc.identifier.issn0099-2240
dc.identifier.urihttp://hdl.handle.net/1885/61504
dc.description.abstractA 16S rRNA gene database (http://greengenes.lbl.gov) addresses limitations of public repositories by providing chimera screening, standard alignment, and taxonomic classification using multiple published taxonomies. It was found that there is incongruent
dc.publisherAmerican Society for Microbiology
dc.sourceApplied and Environmental Microbiology
dc.subjectKeywords: Bacteria; Data acquisition; Database systems; Environmental impact; Genetic engineering; RNA; Chimera screening; Greengenes; Phylum-level lineages; Taxonomic nomenclature; Genes; ribosome RNA; bacterium; chimera; database; RNA; taxonomy; Archaebacterium;
dc.titleGreengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
dc.typeJournal article
local.description.notesImported from ARIES
local.identifier.citationvolume72
dc.date.issued2006
local.identifier.absfor060102 - Bioinformatics
local.identifier.ariespublicationU4217927xPUB616
local.type.statusPublished Version
local.contributor.affiliationDeSantis, T. Z., Lawrence Berkeley National Laboratory
local.contributor.affiliationHugenholtz, P., DOE Joint Genome Project
local.contributor.affiliationLarsen, N, Danish Genome Institute
local.contributor.affiliationRojas, M., Baylor University
local.contributor.affiliationBrodie, E. L., Lawrence Berkeley National Laboratory
local.contributor.affiliationKeller, K., University of California
local.contributor.affiliationHuber, Thomas, College of Physical and Mathematical Sciences, ANU
local.contributor.affiliationDalevi, D., Chalmers University of Technology
local.contributor.affiliationHu, P., Lawrence Berkeley National Laboratory
local.contributor.affiliationAndersen, G. L., Lawrence Berkeley National Laboratory
local.description.embargo2037-12-31
local.bibliographicCitation.issue7
local.bibliographicCitation.startpage5069
local.bibliographicCitation.lastpage5072
local.identifier.doi10.1128/AEM.03006-05
dc.date.updated2015-12-10T08:24:07Z
local.identifier.scopusID2-s2.0-33746061683
CollectionsANU Research Publications

Download

File Description SizeFormat Image
01_DeSantis_Greengenes,_a_Chimera-Checked_2006.pdf141.52 kBAdobe PDF    Request a copy


Items in Open Research are protected by copyright, with all rights reserved, unless otherwise indicated.

Updated:  19 May 2020/ Responsible Officer:  University Librarian/ Page Contact:  Library Systems & Web Coordinator