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Structural partitioning, paired-sites models and evolution of the ITS transcript in Syzygium and Myrtaceae

Biffin, Ed; Harrington, Mark G.; Crisp, Michael; Craven, Lyn A.; Gadek, Paul


The internal transcribed spacers (ITS) of nuclear ribosomal DNA are widely used for phylogenetic inference. Several characteristics, including the influence of RNA secondary structure on the mutational dynamics of ITS, may impact on the accuracy of phylogenies estimated from these regions. Here, we develop RNA secondary structure predictions for representatives of the angiosperm family Myrtaceae. On this basis, we assess the utility of structural (stem vs. loop) partitioning, and RNA-specific...[Show more]

CollectionsANU Research Publications
Date published: 2007
Type: Journal article
Source: Molecular Phylogenetics and Evolution
DOI: 10.1016/j.ympev.2006.08.013


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