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De novo assembly and phasing of dikaryotic genomes from two isolates of puccinia coronata f. Sp. avenae, the causal agent of oat crown rust

Miller, Marisa E; Zhang, Ying; Omidvar, Vahid; Sperschneider, Jana; Schwessinger, Benjamin; Raley, Castle; Palmer, Jonathan M; garnica, Diana; Upadhyaya, Narayana M; Rathjen, John; Taylor, Jennifer; Park, Robert; Dodds, Peter N; Hirsch, Corey; Kianian, Shahryar


Oat crown rust, caused by the fungus Pucinnia coronata f. sp. avenae, is a devastating disease that impacts worldwide oat production. For much of its life cycle, P. coronata f. sp. avenae is dikaryotic, with two separate haploid nuclei that may vary in virulence genotype, highlighting the importance of understanding haplotype diversity in this species. We generated highly contiguous de novo genome assemblies of two P. coronata f. sp. avenae isolates, 12SD80 and 12NC29, from...[Show more]

CollectionsANU Research Publications
Date published: 2018
Type: Journal article
Source: mBio
DOI: 10.1128/mBio.01650-17
Access Rights: Open Access


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