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LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell

Sperschneider, Jana; Catanzariti, Ann-Maree; DeBoer, D.; DeBoer, Kathleen; Petre, Benjamin; Gardiner, Donald M; Singh, Karam B; Dodds, Peter N; Taylor, Jennifer

Description

Pathogens secrete effector proteins and many operate inside plant cells to enable infection. Some effectors have been found to enter subcellular compartments by mimicking host targeting sequences. Although many computational methods exist to predict plant protein subcellular localization, they perform poorly for effectors. We introduce LOCALIZER for predicting plant and effector protein localization to chloroplasts, mitochondria, and nuclei. LOCALIZER shows greater prediction accuracy for...[Show more]

CollectionsANU Research Publications
Date published: 2017
Type: Journal article
URI: http://hdl.handle.net/1885/242586
Source: Scientific Reports
DOI: 10.1038/srep44598
Access Rights: Open Access

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