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The variable codons of H3 influenza A virus haemagglutinin genes

Gibbs, Mark; Wayper, Paul; Fourment, Mathieu; Wood, Jeffrey; Ohshima, Kazusato; Armstrong, John; Gibbs, Adrian J


We have analyzed several sets of well-studied haemagglutinin (HA) gene sequences of H3 subtype influenza A viruses to identify codons that are unusually variable, using a simple pairwise sliding window method, DnDscanning. For two of the sets there were results of detailed phylogenetic modeling studies of selection already published. A third set had been the subject of an antigen mapping study, the results of which provide a completely independent benchmark of selected changes in H3 HA genes....[Show more]

CollectionsANU Research Publications
Date published: 2007
Type: Journal article
Source: Archives of Virology
DOI: 10.1007/s00705-006-0834-8


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