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Elucidating the Small Regulatory RNA Repertoire of the Sea Anemone Anemonia viridis Based on Whole Genome and Small RNA Sequencing

Urbarova, Ilona; Patel, Hardip; Foret, Sylvain; Karlsen, Bard Ove; Jorgensen, Tor Erik; Hall-Spencer, Jason M.; Johansen, Steinar D.

Description

Cnidarians harbor a variety of small regulatory RNAs that include microRNAs (miRNAs) and PIWI-interacting RNAs (piRNAs), but detailed information is limited. Here, we report the identification and expression of novel miRNAs and putative piRNAs, as well as their genomic loci, in the symbiotic sea anemone Anemonia viridis. We generated a draft assembly of the A. viridis genome with putative size of 313 Mb that appeared to be composed of about 36% repeats, including known transposable elements. We...[Show more]

CollectionsANU Research Publications
Date published: 2018
Type: Journal article
URI: http://hdl.handle.net/1885/159342
Source: Genome Biology and Evolution
DOI: 10.1093/gbe/evy003
Access Rights: Open Access

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