Physico-chemical foundations underpinning microarray and next-generation sequencing experiments
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Harrison, Andrew; Binder, Hans; Buhot, Arnaud; Burden, Conrad J; Carlon, Enrico; Gibas, Cynthia; Gamble, Lara J; Halperin, Avraham; Hooyberghs, Jef; Kreil, David P; Levicky, Rastislav; Noble, Peter A; Ott, Albrecht; Pettitt, B Montgomery; Tautz, Diethard; Pozhitkov, Alexander E.
Description
Hybridization of nucleic acids on solid surfaces is a key process involved in high-throughput technologies such as microarrays and, in some cases, next- generation sequencing (NGS). A physical understanding of the hybridization process helps to determine the accuracy of these technologies. The goal of a widespread research program is to develop reliable transformations between the raw signals reported by the technologies and individual molecular concentrations from an ensemble of nucleic acids....[Show more]
dc.contributor.author | Harrison, Andrew | |
---|---|---|
dc.contributor.author | Binder, Hans | |
dc.contributor.author | Buhot, Arnaud | |
dc.contributor.author | Burden, Conrad J | |
dc.contributor.author | Carlon, Enrico | |
dc.contributor.author | Gibas, Cynthia | |
dc.contributor.author | Gamble, Lara J | |
dc.contributor.author | Halperin, Avraham | |
dc.contributor.author | Hooyberghs, Jef | |
dc.contributor.author | Kreil, David P | |
dc.contributor.author | Levicky, Rastislav | |
dc.contributor.author | Noble, Peter A | |
dc.contributor.author | Ott, Albrecht | |
dc.contributor.author | Pettitt, B Montgomery | |
dc.contributor.author | Tautz, Diethard | |
dc.contributor.author | Pozhitkov, Alexander E. | |
dc.date.accessioned | 2014-04-10T02:55:32Z | |
dc.date.available | 2014-04-10T02:55:32Z | |
dc.identifier.issn | 0305-1048 | |
dc.identifier.uri | http://hdl.handle.net/1885/11556 | |
dc.description.abstract | Hybridization of nucleic acids on solid surfaces is a key process involved in high-throughput technologies such as microarrays and, in some cases, next- generation sequencing (NGS). A physical understanding of the hybridization process helps to determine the accuracy of these technologies. The goal of a widespread research program is to develop reliable transformations between the raw signals reported by the technologies and individual molecular concentrations from an ensemble of nucleic acids. This research has inputs from many areas, from bioinfor- matics and biostatistics, to theoretical and experi- mental biochemistry and biophysics, to computer simulations. A group of leading researchers met in Ploen Germany in 2011 to discuss present know- ledge and limitations of our physico-chemical understanding of high-throughput nucleic acid technologies. This meeting inspired us to write this summary, which provides an overview of the state-of-the-art approaches based on physico-chemical foundation to modeling of the nucleic acids hybridization process on solid surfaces. In addition, practical application of current knowledge is emphasized. | |
dc.format | 18 pages | |
dc.publisher | Oxford University Press | |
dc.rights | © The Author(s) 2013.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. | |
dc.source | Nucleic Acids Research 41.5 (2013): 2779–2796 | |
dc.subject | physico-chemical | |
dc.subject | microarray | |
dc.subject | next-generation | |
dc.subject | sequencing | |
dc.title | Physico-chemical foundations underpinning microarray and next-generation sequencing experiments | |
dc.type | Journal article | |
local.identifier.citationvolume | 41 | |
dc.date.issued | 2013-01-09 | |
local.identifier.absfor | 060102 - Bioinformatics | |
local.identifier.absfor | 010402 - Biostatistics | |
local.identifier.ariespublication | u4743872xPUB91 | |
local.publisher.url | http://www.oxfordjournals.org/ | |
local.type.status | Published Version | |
local.contributor.affiliation | Harrison, Andrew, University of Essex | |
local.contributor.affiliation | Binder, Hans, University Leipzig | |
local.contributor.affiliation | Buhot, Arnaud, CEA Grenoble | |
local.contributor.affiliation | Burden, Conrad, College of Physical and Mathematical Sciences, ANU | |
local.contributor.affiliation | Carlon, Enrico, Katholieke Universiteit Leuven | |
local.contributor.affiliation | Gibas, Cynthia, University of North Carolina at Charlotte | |
local.contributor.affiliation | Gamble, Lara J, University of Washington | |
local.contributor.affiliation | Halperin, Avraham, University of Grenoble | |
local.contributor.affiliation | Hooyberghs, Jef, Flemish Institute for Technological Research | |
local.contributor.affiliation | Kreil, David P, University of Warwick | |
local.contributor.affiliation | Levicky, Rastislav, Polytechnic Institute of New York University | |
local.contributor.affiliation | Noble, Peter A, University of Washington | |
local.contributor.affiliation | Ott, Albrecht, Universitaet des Saarlandes | |
local.contributor.affiliation | Pettitt, B Montgomery, The University of Texas Medical Branch | |
local.contributor.affiliation | Tautz, Diethard, Max-Planck Institut | |
local.contributor.affiliation | Pozhitkov, Alexander E, University of Washington | |
dc.relation | http://purl.org/au-research/grants/arc/dp1094699 | |
local.bibliographicCitation.issue | 5 | |
local.bibliographicCitation.startpage | 2779 | |
local.bibliographicCitation.lastpage | 2796 | |
local.identifier.doi | 10.1093/nar/gks1358 | |
local.identifier.doi | 10.1093/nar/gks1358 | |
local.identifier.absseo | 970106 - Expanding Knowledge in the Biological Sciences | |
dc.date.updated | 2015-12-08T08:40:28Z | |
local.identifier.scopusID | 2-s2.0-84876354602 | |
local.identifier.thomsonID | 000318062600008 | |
Collections | ANU Research Publications |
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