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FREP: a database of functional repeats in mouse cDNAs

Nagashima, Takeshi; Matsuda, Hideo; Silva, Diego; Petrovsky, Nikolai; RIKEN GER Group; GSL Members; Konagaya, Akihiko; Schonbach, Christian


The FREP database ( contains 31 396 RepeatMasker-identified non-redundant variant repeat sequences derived from 16 527 mouse cDNAs with protein-coding potential. The repeats were computationally associated with potential effects on transcriptional variation, translation, protein function or involvement in disease to identify Functional REPeats (FREPs). FREPs are defined by the (i) occurrence of exon–exon boundaries in repeats, (ii) presence of polyadenylation...[Show more]

CollectionsANU Research Publications
Date published: 2004-01
Type: Journal article
Source: Nucleic Acids Research
DOI: 10.1093/nar/gkh123


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